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A 5.3‐million‐year history of monsoonal precipitation in northwestern Australia ArchiMer
Stuut, Jan‐berend W.; De Deckker, Patrick; Saavedra‐pellitero, Mariem; Bassinot, Franck; Drury, Anna‐joy; Walczak, Maureen H.; Nagashima, Kana; Murayama, Masafumi.
New proxy records from deep‐sea sediment cores from the northwestern continental margin of Western Australian reveal a 5.3 million‐year (Ma) history of aridity and tropical‐monsoon activity in northwestern Australia. Following the warm and dry early Pliocene (~5.3 Ma), the northwestern Australian continent experienced a gradual increase in humidity peaking at about 3.8 Ma with higher than present‐day rainfall. Between 3.8 and about 2.8 Ma, climate became progressively more arid with more rainfall variability. Coinciding with the onset of the northern hemisphere glaciations and the intensification of the northern hemisphere monsoon, aridity continued to increase overall from 2.8 Ma until...
Tipo: Text Palavras-chave: Paleoclimate; Monsoon; Australia; Runoff; Pliocene; Quaternary.
Ano: 2019 URL: https://archimer.ifremer.fr/doc/00502/61384/65035.pdf
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A 6 year record of baroclinic transport variability of the Antarctic Circumpolar Current at 140 degrees E derived from expendable bathythermograph and altimeter measurements ArchiMer
Rintoul, Sr; Sokolov, S; Church, J.
Repeat hydrographic sections across the Antarctic Circumpolar Current are used to derive an empirical relationship between upper ocean temperature and the baroclinic transport stream function. Cross validation shows this relationship can be used to infer baroclinic transport (above and relative to 2500 dbar) from temperature measurements with an error of a few per cent. The mean transport distribution derived from 31 austral summer expendable bathythermograph (XBT) sections over a 6 year period consists of westward flow immediately south of Tasmania, a broad band of strong eastward flow between 50degrees and 55degreesS, and three cores of eastward flow south of 55degreesS. By defining a second empirical relationship between surface dynamic height and...
Tipo: Text Palavras-chave: Baroclinic transport; Antarctic Circumpolar Current; Interannual variability; Satellite altimeter; XBT.
Ano: 2002 URL: https://archimer.ifremer.fr/doc/00223/33444/31832.pdf
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A 60 000 year Greenland stratigraphic ice core chronology ArchiMer
Svensson, A.; Andersen, K. K.; Bigler, M.; Clausen, H. B.; Dahl-jensen, D.; Davies, S. M.; Johnsen, S. J.; Muscheler, R.; Parrenin, F.; Rasmussen, S. O.; Roethlisberger, R.; Seierstad, I.; Steffensen, J. P.; Vinther, B. M..
The Greenland Ice Core Chronology 2005 (GICC05) is a time scale based on annual layer counting of high-resolution records from Greenland ice cores. Whereas the Holocene part of the time scale is based on various records from the DYE-3, the GRIP, and the NorthGRIP ice cores, the glacial part is solely based on NorthGRIP records. Here we present an 18 ka extension of the time scale such that GICC05 continuously covers the past 60 ka. The new section of the time scale places the onset of Greenland Interstadial 12 (GI-12) at 46.9 +/- 1.0 ka b2k (before year AD 2000), the North Atlantic Ash Zone II layer in GI-15 at 55.4 +/- 1.2 ka b2k, and the onset of GI-17 at 59.4 +/- 1.3 ka b2k. The error estimates are derived from the accumulated number of uncertain annual...
Tipo: Text
Ano: 2008 URL: https://archimer.ifremer.fr/doc/00238/34893/33135.pdf
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A 6600 year earthquake history in the region of the 2004 Sumatra-Andaman subduction zone earthquake ArchiMer
Patton, Jason R.; Goldfinger, Chris; Morey, Ann E.; Ikehara, Ken; Romsos, Chris; Stoner, Joseph; Djadjadihardja, Yusuf; Udrekh,; Sri Ardhyastuti,; Gaffar, Eddy Zulkarnaen; Vizcaino, Alexis.
In order to investigate the possibility of a long-term paleoseismic history from offshore sedimentary records in Sumatra, we collected 144 deep-sea sedi-ment cores in the trench and in lower slope piggyback basins of the Sumatra accretionary prism. We used multibeam bathymetry and seismic reflection data to develop an understanding of catchment basins, turbidity current pathways, and depositional styles, as well as to precisely locate our gravity cores, piston cores, Kasten cores, and multicores. We use detailed physical property data, including computed tomographic X-ray, gamma density, magnetic susceptibility, grain-size analysis, faunal analysis, and smear slides, to evaluate the turbidite stratigraphy and sedimentology at each site. We use radiocarbon...
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Ano: 2015 URL: https://archimer.ifremer.fr/doc/00351/46229/46162.pdf
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A Bayesian framework to objectively combine metrics when developing stressor specific multimetric indicator ArchiMer
Drouineau, Hilaire; Lobry, Jeremy; Delpech, C.; Bouchoucha, Marc; Mahevas, Stephanie; Courrat, A.; Pasquaud, S.; Lepage, M..
In the context of the European Water Framework Directive (WFD), monitoring programs and related indicators have been developed to assess anthropogenic impacts on various components of aquatic ecosystems. While great precautions are usually taken when selecting and calculating relevant core metrics, little attention is generally paid to the generation of the multimetric indicator, i.e. the combination of the different core metrics. Indeed, most multimetric indicators are generated by simply averaging or summing metrics, without taking into account their sensitivity and their variability. Moreover, few indicators provide a rigorous estimate of the uncertainty of the assessments, while this estimation is essential for managers. In this context, we developed a...
Tipo: Text Palavras-chave: Multimetric fish-based indicator; Bayesian method; Pressure-impact models; Water Framework Directive; Anthropogenic pressure; Monitoring program; Transitional waters.
Ano: 2012 URL: http://archimer.ifremer.fr/doc/00049/16037/13572.pdf
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A Bayesian state-space model to estimate population biomass with catch and limited survey data: application to the thornback ray (Raja clavata) in the Bay of Biscay ArchiMer
Marandel, Florianne; Lorance, Pascal; Trenkel, Verena M..
The thornback ray (Raja clavata) in the Bay of Biscay is presumed to have declined during the 20th Century. To evaluate this decline and estimate biomass trajectories, a hypothetical catch time series was created for the period 1903-2013. A Bayesian state-space biomass production model with a Schaefer production function was fitted to the hypothetical catch time series and to a shorter research vessel Catch Per Unit Eeffort (CPUE) time series (1973-2013, with missing years). A censored likelihood made it possible to obtain biomass estimates without a CPUE time series or only with an estimate of biomass depletion. A simulation-estimation approach showed a high sensitivity of results to the prior for the intrinsic growth rate. The model provided biomass...
Tipo: Text Palavras-chave: Population dynamics; Stock assessment; Data poor; Censored data; Bayes; Thornback ray; State-space model.
Ano: 2016 URL: http://archimer.ifremer.fr/doc/00359/47032/46947.pdf
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A Bayesian two-stage biomass model applied to the English Channel stock of cuttlefish (Sepia officinalis) ArchiMer
Alemany, Juliette; Rivot, Etienne; Foucher, Eric; Vigneau, Joel; Robin, Jean-paul.
Among the English Channel fishery, the importance of cuttlefish stock has increased, following the cephalopods global landings and market trend. An adapted stock assessment model is needed in order to give good management advice with accurate uncertainties. Age based methods in this species are hampered by time consuming age determination with statoliths. A model requiring few data and adapted to the species life-history is therefore proposed. An assessment of this stock was conducted in June 2015 by fitting a two-stage biomass model on a 22 years’ time-series (1992-2014). The use of a Bayesian framework is particularly adapted for decision making, allowing the propagation of uncertainty in the model. It also permits the use of different sources of...
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Ano: 2015 URL: http://archimer.ifremer.fr/doc/00379/49066/49514.pdf
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A Bayesian two-stage biomass model for stock assessment of data-limited species: An application to cuttlefish ( Sepia officinalis ) in the English Channel ArchiMer
Alemany, Juliette; Rivot, Etienne; Foucher, Eric; Vigneau, Joel; Robin, Jean-paul.
Cuttlefish is a key commercial species in the English Channel fishery in terms of landings and value. Age-based assessment methods are limited by time-consuming age determination with statoliths and the lack of stock assessment models tailored to this data-limited species. A two-stage biomass model is developed in the Bayesian state-space modelling framework that allows inferences to be made on the stock biomass at the start, middle and end of each fishing seasons between 1992 and 2014, while accounting for both process and measurement errors and to assimilate various sources of information. A method that uses ancillary length-frequency data is developed to provide an informative prior distribution for the biomass growth rate parameter g (E = 0.89) and its...
Tipo: Text Palavras-chave: English Channel; Cuttlefish; Sepia officinalis; Bayesian state-space model; Data-limited stock; Two-stage biomass model.
Ano: 2017 URL: http://archimer.ifremer.fr/doc/00376/48766/49289.pdf
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A behavioural fish movement approach within an anchovy IBM model to study fish migration patterns in the Bay of Biscay ArchiMer
Politikos, Dimitrios; Huret, Martin; Petitgas, Pierre.
Modelling of fish movement behaviour within a heterogeneous marine environment is a challenging but also key issue for understanding the effect of environmental factors and climatic change on fish processes (growth, distribution, mortality, reproduction). Fish movement models have the capability to encompass the combined effect of environment and empirical knowledge of fish individuals as energy requirements, known preys and predators, swimming capacities into a unified framework. Following an Individual Based Model (IBM) approach, a fish movement model has been developed to simulate the active movement of adult anchovy in the Bay of Biscay (BoB) in response to the spatio-temporal variations of both biotic and abiotic factors, as well as its internal...
Tipo: Text
Ano: 2013 URL: http://archimer.ifremer.fr/doc/00176/28709/27161.pdf
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A benthic Si mass balance on the Congo margin: Origin of the 4000 m DSi anomaly and implications for the transfer of Si from land to ocean ArchiMer
Ragueneau, O.; Regaudie-de-gioux, A.; Moriceau, B.; Gallinari, M.; Vangriesheim, Annick; Baurand, F.; Khripounoff, Alexis.
To elucidate the origin of the silicic acid (DSi) anomaly observed along the 4000 isobath on the Congo margin, we have established a benthic Si mass balance and performed direct measurements of biogenic silica (bSiO(2)) dissolution in the deep waters and in the sediments. Results strongly suggest that the anomaly originates from the sediments; the intensity of DSi recycling is consistent with the degradation of organic matter, as observed from Si:O-2 ratios in the benthic fluxes compared to that ratio observed in the anomalies. Strong imbalances, observed in both the Si and C mass balances, suggest that the biogenic matter that degrades and dissolves in these sediments near 4000 m does not come from pelagic sedimentation. It is probably not coming also...
Tipo: Text Palavras-chave: Congo; Continental margin; Preservation; Dissolution; Biogenic silica.
Ano: 2009 URL: http://archimer.ifremer.fr/doc/2009/publication-7410.pdf
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A BGC-Argo Guide: Planning, Deployment, Data Handling and Usage ArchiMer
Bittig, Henry C.; Maurer, Tanya L.; Plant, Joshua N.; Schmechtig, Catherine; Wong, Annie P. S.; Claustre, Hervé; Trull, Thomas W.; Udaya Bhaskar, T. V. S.; Boss, Emmanuel; Dall’olmo, Giorgio; Organelli, Emanuele; Poteau, Antoine; Johnson, Kenneth S.; Hanstein, Craig; Leymarie, Edouard; Le Reste, Serge; Riser, Stephen C.; Rupan, A. Rick; Taillandier, Vincent; Thierry, Virginie; Xing, Xiaogang.
The Biogeochemical-Argo program (BGC-Argo) is a new profiling-float-based, ocean wide, and distributed ocean monitoring program which is tightly linked to, and has benefited significantly from, the Argo program. The community has recommended for BGC-Argo to measure six additional properties in addition to pressure, temperature and salinity measured by Argo, to include oxygen, pH, nitrate, downwelling light, chlorophyll fluorescence and the optical backscattering coefficient. The purpose of this addition is to enable the monitoring of ocean biogeochemistry and health, and in particular, monitor major processes such as ocean deoxygenation, acidification and warming and their effect on phytoplankton, the main source of energy of marine ecosystems. Here we...
Tipo: Text Palavras-chave: Ocean observation; Ocean biogeochemical cycles; Sensors; Carbon cycle; Ocean optics; Best practices; Argo.
Ano: 2019 URL: https://archimer.ifremer.fr/doc/00512/62344/66607.pdf
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A bibliography of the Manila clam Tapes philippinarum ArchiMer
Goulletquer, Philippe.
A bibliography of over 1,400 papers on reproduction, recruitment, genetic, pathology, basic biology, and the geographic distribution of the Manila clam Tapes philippinarum is compiled to provide a guide to scientists. This review aims to facilitate access and diffusion of scientific works carried out on this species to the international scientific community concerned by Tapes philippinarum. The bibliography includes publications as well as grey literature published around the world since the early century. Moreover, the large synonymy of Tapes philippinarum and the species geographic distribution are reviewed and updated. The species importance is assessed through public fishery landings and aquaculture production per country. The D'v'eral1 worldwide...
Tipo: Text Palavras-chave: Bibliography; Tapes philippinarum; Manila clam; Synthèse bibliographique; Tapes philippinarum; Manila clam.
Ano: 1997 URL: http://archimer.ifremer.fr/doc/1997/rapport-3221.pdf
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A Bibliometric Analysis of Microalgae Research in the World, Europe, and the European Atlantic Area ArchiMer
Rumin, Judith; Nicolau, Elodie; Gonçalves De Oliveira Junior, Raimundo; Fuentes-grünewald, Claudio; Flynn, Kevin J; Picot, Laurent.
A bibliographic database of scientific papers published by authors affiliated worldwide, especially focused in Europe and in the European Atlantic Area, and containing the keywords “microalga(e)” or “phytoplankton” was built. A corpus of 79,020 publications was obtained and analyzed using the Orbit Intellixir software to highlight the evolution of the research domain. Publication rates from 1960 to 2019, organization of the research, collaboration networks between countries and organizations, emerging and fading research concepts, major studied species, and associated concepts, as well as journals publishing microalgae research were considered. As a result, of the 79,020 papers published worldwide, 26,137 included authors from Europe (33% of world...
Tipo: Text Palavras-chave: Biotechnology; European Atlantic Area; Microalgae; Phytoplankton; Research; Market; Bibliometrics.
Ano: 2020 URL: https://archimer.ifremer.fr/doc/00605/71725/70191.pdf
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A bimodal alkalic shield volcano on Skiff Bank: Its place in the evolution of the Kerguelen Plateau ArchiMer
Kieffer, B; Arndt, Nt; Weis, D.
A bimodal volcanic sequence of 230 m thickness on Skiff Bank, a western salient of the northern Kerguelen Plateau, was drilled during ODP Leg 183. The sequence comprises three main units: a mafic unit of trachybasalt flows sandwiched between two units of trachytic or rhyolitic flows and volcaniclastic rocks. Although interpretation is complicated by moderate to strong alteration of the rocks, their original chemical character can be established using the least mobile major and trace elements (Al, Th, high field strength elements and rare earth elements). High concentrations of alkalis and incompatible trace elements indicate that both mafic and felsic rocks are alkalic. The felsic rocks may have been derived by partial melting of mafic rocks, followed by...
Tipo: Text Palavras-chave: Ocean Drilling Program; Kerguelen Plateau; Skiff Bank.
Ano: 2002 URL: https://archimer.ifremer.fr/doc/00223/33406/31863.pdf
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A bio-economic analysis of experimental selective devices in the Norway lobster (Nephrops norvegicus) fishery in the Bay of Biscay ArchiMer
Raveau, Adriana; Macher, Claire; Mehault, Sonia; Merzereaud, Mathieu; Le Grand, Christelle; Guyader, Olivier; Bertignac, Michel; Fifas, Spyros; Guillen Garcia, Jordi.
Several fleets with various fishing strategies operate as a mixed fishery in the Bay of Biscay. Among the main fleets, bottom trawlers target Norway lobster (Nephrops norvegicus) and, together with gillnetters, they also catch hake (Merluccius merluccius). Trawling leads to average-size catches that are below the minimum landing size (MLS); such catches are discarded since they cannot be sold. These discards result in negative impacts on stock renewal, as most of them do not survive. This also results in an economic loss for both bottom trawlers and gillnetters since these discards represent a future loss of rent. This study, based on the 2009 and 2010 selectivity experiments at sea, assesses the short- and long-term bio-economic impacts of four...
Tipo: Text Palavras-chave: Demersal trawl fishery; Bio-economic analysis; Selectivity; Simulation; Selective device; Nephrops norvegicus; Merluccius merluccius; Atlantic Ocean.
Ano: 2012 URL: http://archimer.ifremer.fr/doc/00110/22135/19774.pdf
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A bio-economic analysis of long term changes in the production of French fishing fleets operating in the Bay of Biscay ArchiMer
Steinmetz, Fabien; Thebaud, Olivier; Blanchard, Fabian; Le Floc H, Pascal; Bihel, J.
Selective fishing pressure on more highly valued marine living resources is one of the key factors proposed to explain changes occurring in fish communities and associated landings of commercial fisheries. The aim of this paper is to establish the nature of changes in the landings of French fishing fleets operating in the Bay of Biscay in the period 1973-2002, and whether these changes could be related to the relative economic attractiveness of different fish species. The analysis focuses on trends observed in the landings of all commercial fish species over the last three decades. It is based on data of annual quantities landed and ex-vessel prices compiled from official French landings records, and on bio-geographical descriptors of these species derived...
Tipo: Text Palavras-chave: North Eastern Atlantic; Bay of Biscay; Long term changes; Bio economic analysis; French fisheries production.
Ano: 2008 URL: http://archimer.ifremer.fr/doc/2008/publication-5926.pdf
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A bioeconomic analysis of the impact of decommissioning programs: Application to a limited-entry french scallop fishery ArchiMer
Guyader, Olivier; Daures, Fabienne; Fifas, Spyros.
The objective of this paper is to assess the benefits and costs of decommissioning policies aimed at reducing fleet capacity through premiums offered by the public authority to fishermen to scrap their vessels. A case study, the limited entry scallop fishery of the Saint Brieuc Bay, France, is used to con- sider the problem of excess capacity and to model the bioeconomic consequences of disinvestment behavior. Special attention is paid to the assessment of fishermen's willingness to leave the fishery and to the implementation of public policy in terms of budget level and premiums offered to the fishermen. Spreadsheet simulations show that the impact of decommissioning programs is positive in terms of net surplus, even in the case of increasing technical...
Tipo: Text Palavras-chave: Fishing capacity; Decommissioning programs; Premium; Willingness to leave; Bioeconomic model; Cost-benefit analysis.
Ano: 2004 URL: https://archimer.ifremer.fr/doc/00243/35449/33977.pdf
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A bio-economic evaluation of the potential for establishing a commercial fishery on two newly developed stocks: The Ionian red shrimp fishery ArchiMer
Guillen Garcia, Jordi; Maynou, Francesc; Floros, Christos; Sampson, David; Conides, Alexis; Kapiris, Kostas.
It has recently been shown that two deep-water red shrimp species (Aristeus antennatus and Aristaeomorpha foliacea) have the potential to support a viable fishery in the Greek Ionian Sea (eastern Mediterranean). In this article, we investigate (i) the evolution that this newly developed trawl shrimp fishery may undergo when subjected to different management measures, and (ii) the most suitable extraction rates considering the uncertainties about the resource. We further analyse the effects that potential future fuel price increases and changes in the market may have on the fishery. Forecasting the biological and economic consequences of management actions, as well as the effects of market changes on inputs and outputs before they are applied, may help...
Tipo: Text Palavras-chave: Bio-economic modelling; Market development; Fuel price; Newly developed stocks; Ionian Sea; Red shrimps.
Ano: 2012 URL: http://archimer.ifremer.fr/doc/00099/20995/19800.pdf
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A bio-economic model for the ecosystem-based management of the coastal fishery in French Guiana ArchiMer
Cisse, Abdoul; Gourguet, Sophie; Doyen, L.; Blanchard, Fabian; Pereau, J. -c..
This paper offers a theoritical and empirical model of ecosystem-based fishery management. A multi-species and multi-fleet integrating Lotka-Volterra trophic dynamics as well as production and profit assessments is developed and applied to the coastal fishery of French Guiana. This small-scale fishery constitutes a challenging example with high fish biodiversity, several non-selective fleets and a potentially increasing local food demand due to demographic growth. The dynamic model is calibrated with 13 species and four fleets using monthly catch and effort data from 2006 to 2009. Several contrasted fishing scenarios including status quo, total closure, economic and viable strategies are then simulated. They are compared from the viewpoints of both...
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Ano: 2013 URL: http://archimer.ifremer.fr/doc/00124/23483/21311.pdf
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A biofilm-forming marine bacterium producing proteins as extracellular polymeric substances ArchiMer
Leroy, Celine; Delbarre Ladrat, Christine; Ghillebaert, François; Compere, Chantal; Combes, Didier.
EPS biochemical characterization and observation by epifluorescencemicroscopy. Development of a marine biofilmformation model onto a polystyrene microtiterplate using the “O’Tooleand Koltermethod”[1] adapted with the well known fluorescent DNA staining DAPI
Tipo: Text
Ano: 2005 URL: http://archimer.ifremer.fr/doc/00089/19998/17661.pdf
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